Ubuntu 16.04 Mate 1.12.1 freezing

My system freezes again…no use of mouse, keyboard, etc. I see all of the windows on the screen, but can’t do anything with them. I’ve tried different Ctrl+Alt combinations to no avail. Previously Ctrl+Alt+F8 followed by Ctrl+Alt+F7 would allow me to regain control over the system, but not now.

System: Host: larry-ThinkPad-E555 Kernel: 4.4.0-34-generic x86_64 (64 bit)
Desktop: MATE 1.12.1 Distro: Ubuntu 16.04 xenial

Things of interest from kern.log:

[Firmware Bug]: ACPI: BIOS OSI(Linux) query ignored
[Firmware Bug]: ACPI: No BQC method, cannot determine initial brightness
kfd kfd: Allocated 3944480 bytes on gart for device(1002:130b)
GPU was not found in the current topology. Extending.
DEBUG PRINT OF TOPOLOGY:
Creating topology SYSFS entries
kfd kfd: error getting iommu info. is the iommu enabled?
kfd kfd: Error initializing iommuv2 for device (1002:130b)
Creating topology SYSFS entries
kfd kfd: device (1002:130b) NOT added due to errors
ACPI Warning: SystemIO range 0x0000000000000B00-0x0000000000000B07 conflicts with OpRegion 0x0000000000000B00-0x0000000000000B0F (_SB
.PCI0.SMB
.SMB0) (20150930/utaddress-254)
ACPI: If an ACPI driver is available for this device, you should use it instead of the native driver
EDAC MC: Ver: 3.0.0
MCE: In-kernel MCE decoding enabled.
AMD64 EDAC driver v3.4.0
EDAC amd64: DRAM ECC disabled.
EDAC amd64: ECC disabled in the BIOS or no ECC capability, module will not load.
Either enable ECC checking or force module loading by setting ‘ecc_enable_override’.
(Note that use of the override may cause unknown side effects.)
kvm: disabled by bios
[1471007508.0161] SettingsPlugin-Ofono: file doesn’t exist: /var/lib/ofono
IPv6: ADDRCONF(NETDEV_UP): enp1s0: link is not ready
r8169 0000:01:00.0 enp1s0: link down
r8169 0000:01:00.0 enp1s0: link down
IPv6: ADDRCONF(NETDEV_UP): enp1s0: link is not ready
m_device_get_device_type: assertion ‘NM_IS_DEVICE (self)’ failed
[1471007508.2150] device (lo): link connected
[1471007508.2191] manager: (lo): new Generic device (/org/freedesktop/NetworkManager/Devices/2)
[1471007508.2699] urfkill disappeared from the bus
[1471007508.2909] bluez: use BlueZ version 5
[1471007508.3775] ofono is now available
[1471007508.3822] ModemManager available in the bus
[1471007508.3848] failed to enumerate oFono devices: GDBus.Error:org.freedesktop.DBus.Error.ServiceUnknown: The name org.ofono was not provided by any .service files
vboxdrv: module verification failed: signature and/or required key missing - tainting kernel
vboxdrv: Found 2 processor cores
vboxdrv: TSC mode is Invariant, tentative frequency 2196023735 Hz
vboxdrv: Successfully loaded version 5.0.24_Ubuntu (interface 0x00240000)
VBoxNetFlt: Successfully started.
VBoxNetAdp: Successfully started.
VBoxPciLinuxInit
vboxpci: IOMMU not found (not registered)
[1471007558.9605] dhcp6 (enp1s0): request timed out
[1471007558.9606] dhcp6 (enp1s0): state changed unknown -> timeout
[1471007558.9614] dhcp6 (enp1s0): canceled DHCP transaction, DHCP client pid 3114
[1471007558.9615] dhcp6 (enp1s0): state changed timeout -> done

Things of interest from auth.log:

lightdm: PAM unable to dlopen(pam_kwallet.so): /lib/security/pam_kwallet.so: cannot open shared object file: No such file or directory
lightdm: PAM adding faulty module: pam_kwallet.so
lightdm: PAM unable to dlopen(pam_kwallet5.so): /lib/security/pam_kwallet5.so: cannot open shared object file: No such file or directory
lightdm: PAM adding faulty module: pam_kwallet5.so
lightdm: pam_unix(lightdm-greeter:session): session opened for user lightdm by (uid=0)
systemd: pam_unix(systemd-user:session): session opened for user lightdm by (uid=0)
systemd-logind[2335]: New session c1 of user lightdm.
lightdm: PAM unable to dlopen(pam_kwallet.so): /lib/security/pam_kwallet.so: cannot open shared object file: No such file or directory
lightdm: PAM adding faulty module: pam_kwallet.so
lightdm: PAM unable to dlopen(pam_kwallet5.so): /lib/security/pam_kwallet5.so: cannot open shared object file: No such file or directory
lightdm: PAM adding faulty module: pam_kwallet5.so
lightdm: pam_succeed_if(lightdm:auth): requirement “user ingroup nopasswdlogin” not met by user “larry”
lightdm: pam_unix(lightdm-greeter:session): session closed for user lightdm
lightdm: pam_unix(lightdm:session): session opened for user larry by (uid=0)
systemd: pam_unix(systemd-user:session): session opened for user larry by (uid=0)

Any ideas?

Hey
Can you provide output of:

inxi -CMG

Cheers

Sure thing…

Machine: System: LENOVO (portable) product: 20DH002QUS v: ThinkPad E555
Mobo: LENOVO model: 20DH002QUS v: SDK0E50510 WIN
Bios: LENOVO v: HTET45WW (1.17 ) date: 07/16/2015
CPU: Dual core AMD A6-7000 Radeon R4 5 Compute Cores 2C+3G (-MCP-) cache: 2048 KB
clock speeds: max: 2200 MHz 1: 1900 MHz 2: 1300 MHz
Graphics: Card: Advanced Micro Devices [AMD/ATI] Kaveri [Radeon R4 Graphics]
Display Server: X.Org 1.18.3 drivers: ati,radeon (unloaded: fbdev,vesa)
Resolution: [email protected]
GLX Renderer: Gallium 0.4 on AMD KAVERI (DRM 2.43.0, LLVM 3.8.0)
GLX Version: 3.0 Mesa 11.2.0

Quick question Larry

Your recent trouble with Kali. Was that with your host or your guest system. I ask because you have several problems going on and you just may be better off backing up your files and doing a fresh install.

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The Kali was on my main system…but i’ve done a fresh install of ubuntu since then.

HI @larryb,

how did you create your install media and did you follow this advice as it sounds like an input/output error when copying system files to the system during install to me?:

My iso for installing ubuntu mate onto my computer is on a usb drive.

I heard that buntu 16.04 doesn’t like ATI anymore
lspci -nnk | grep -iA2 vga

to get info about driver in use

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Problem # 1: There are known ACPI problems in Lenovo’s BIOS code.

and

You might want to try the kernel option “acpi_enforce_resources=lax” to get around some of the problems. If the ACPI code in the BIOS really sets up two different pieces of hardware at overlapping addresses then that is bad news.

To add the kernel option you would edit “/etc/default/grub” and add “acpi_enforce_resources=lax” to either GRUB_CMDLINE_LINUX_DEFAULT= or GRUB_CMDLINE_LINUX=.

There have been a number of kernel bug reports opened about Lenovo hardware.

Problem # 2:

You have virtualization disabled in the BIOS somewhere. I’ve seen different BIOS call the option many different things often with no clue that the option affects virtualization. I’m not sure what side effects could occur loading virtualbox drivers with hardware virtualization disabled.

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I really appreciate the help.

$ lspci -nnk | grep -iA2 vga gives this output:

00:01.0 VGA compatible controller [0300]: Advanced Micro Devices, Inc. [AMD/ATI] Kaveri [Radeon R4 Graphics] [1002:130b]
Subsystem: Lenovo Kaveri [Radeon R4 Graphics] [17aa:5110]
Kernel driver in use: radeon

I edited the grub file and added "acpi_enforce_resources=lax" to GRUB_CMDLINE_LINUX=

Then i did a grub-update.

I changed my BIOS to allow virtualization.

Does my video drive look ok or should i not use the proprietary one?

Also, one of my startup apps MATE NVIDIA Optimus, which shows a tray icon when a compatible NVIDIA Optimus graphics card is detected. Do i need that as a startup app?

You don’t need NVIDIA Optimus, you have a Radeon GPU.

Your video driver should be “amdgpu”. You can look in the Xorg.0.log with the System Log Viewer to see what driver gets loaded. Either Radeon or AMDGPU would be OK. My AMD A8 uses the Radeon driver. From the info you provided it looks like your video is OK.

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