Up top where it says: Applications Places System, my home folder and desktop folder are in the list when I click Places. They now link to gdebi-gtk instead of where they should link. Can someone tell me how to get to the guts and change this link back to the correct place? Thanks, I have tried everything I know to try.
System, Preferences, Personal, Preferred Applications - 3rd tab System. Make sure that Caja is specified as your File Manager. Good luck -
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OMG so easy I feel like a dork 
Thanks man.