If I'm understanding this right, it's a console application asking for input - and there's is no terminal or way for the user to enter anything.
Instead, if you need the application to run and show a terminal, consider this:
mate-terminal -e "/home/sur/exe/app"
Or if it runs invisibly in the background, try adding
bash to the start:
I'm not sure what type of file we're dealing with -- a binary, a shell or Python script?
Double check that the file is marked as executable or it will not have permission to run.