I use the dock applet for Mate panel as my window list (vertical panel). When the Software Updater pops up (default settings), it starts minimized (I guess to not interfere with whatever I’m doing at the moment). This would be fine, except that it doesn’t show up in the dock until I alt-tab into it.
If I wouldn’t use alt-tab, I would never know there were updates at all, leading to potential security issues.
I’m using Ubuntu Mate 16.04.1, on two systems (Skylake and Sandy Bridge).
I’ve reported it to the dock applet developer, but I’m not 100% sure that’s where the problem is, so I thought I’d post here as well.